FM / lib

/usr/lib64/python2.6/site-packages/numpy/lib/

/usr/lib64/python2.6/site-packages/numpy/lib

Name	Size	Mode	Actions
benchmarks/	-	0755	rm
tests/	-	0755	rm
arraysetops.py	13704	0644	edit dl rm
arraysetops.pyc	13380	0644	edit dl rm
arraysetops.pyo	13380	0644	edit dl rm
arrayterator.py	6437	0644	edit dl rm
arrayterator.pyc	7022	0644	edit dl rm
arrayterator.pyo	7022	0644	edit dl rm
financial.py	20872	0644	edit dl rm
financial.pyc	21546	0644	edit dl rm
financial.pyo	21546	0644	edit dl rm
format.py	19309	0644	edit dl rm
format.pyc	17279	0644	edit dl rm
format.pyo	17279	0644	edit dl rm
function_base.py	100524	0644	edit dl rm
function_base.pyc	99169	0644	edit dl rm
function_base.pyo	99169	0644	edit dl rm
getlimits.py	8790	0644	edit dl rm
getlimits.pyc	10053	0644	edit dl rm
getlimits.pyo	10053	0644	edit dl rm
index_tricks.py	26790	0644	edit dl rm
index_tricks.pyc	28008	0644	edit dl rm
index_tricks.pyo	28008	0644	edit dl rm
info.py	6240	0644	edit dl rm
info.pyc	6425	0644	edit dl rm
info.pyo	6425	0644	edit dl rm
io.py	53226	0644	edit dl rm
io.pyc	44102	0644	edit dl rm
io.pyo	44102	0644	edit dl rm
machar.py	10658	0644	edit dl rm
machar.pyc	8688	0644	edit dl rm
machar.pyo	8688	0644	edit dl rm
polynomial.py	35562	0644	edit dl rm
polynomial.pyc	38139	0644	edit dl rm
polynomial.pyo	38139	0644	edit dl rm
recfunctions.py	32038	0644	edit dl rm
recfunctions.pyc	29451	0644	edit dl rm
recfunctions.pyo	29451	0644	edit dl rm
scimath.py	13997	0644	edit dl rm
scimath.pyc	15867	0644	edit dl rm
scimath.pyo	15867	0644	edit dl rm
setup.py	588	0644	edit dl rm
setup.pyc	918	0644	edit dl rm
setup.pyo	918	0644	edit dl rm
setupscons.py	470	0644	edit dl rm
setupscons.pyc	824	0644	edit dl rm
setupscons.pyo	824	0644	edit dl rm
shape_base.py	24387	0644	edit dl rm
shape_base.pyc	25291	0644	edit dl rm
shape_base.pyo	25291	0644	edit dl rm
stride_tricks.py	3972	0644	edit dl rm
stride_tricks.pyc	3863	0644	edit dl rm
stride_tricks.pyo	3863	0644	edit dl rm
twodim_base.py	22946	0644	edit dl rm
twodim_base.pyc	25464	0644	edit dl rm
twodim_base.pyo	25464	0644	edit dl rm
type_check.py	17075	0644	edit dl rm
type_check.pyc	18392	0644	edit dl rm
type_check.pyo	18392	0644	edit dl rm
ufunclike.py	5452	0644	edit dl rm
ufunclike.pyc	6311	0644	edit dl rm
ufunclike.pyo	6311	0644	edit dl rm
user_array.py	7475	0644	edit dl rm
user_array.pyc	15727	0644	edit dl rm
user_array.pyo	15727	0644	edit dl rm
utils.py	34034	0644	edit dl rm
utils.pyc	30422	0644	edit dl rm
utils.pyo	30422	0644	edit dl rm
_compiled_base.so	19720	0755	edit dl rm
_datasource.py	20638	0644	edit dl rm
_datasource.pyc	20986	0644	edit dl rm
_datasource.pyo	20986	0644	edit dl rm
_iotools.py	27712	0644	edit dl rm
_iotools.pyc	26916	0644	edit dl rm
_iotools.pyo	26916	0644	edit dl rm
__init__.py	936	0644	edit dl rm
__init__.pyc	1038	0644	edit dl rm
__init__.pyo	1038	0644	edit dl rm

Edit: /usr/lib64/python2.6/site-packages/numpy/lib/_datasource.py (20638B)

"""A file interface for handling local and remote data files.
The goal of datasource is to abstract some of the file system operations when
dealing with data files so the researcher doesn't have to know all the
low-level details.  Through datasource, a researcher can obtain and use a
file with one function call, regardless of location of the file.

DataSource is meant to augment standard python libraries, not replace them.
It should work seemlessly with standard file IO operations and the os module.

DataSource files can originate locally or remotely:

- local files : '/home/guido/src/local/data.txt'
- URLs (http, ftp, ...) : 'http://www.scipy.org/not/real/data.txt'

DataSource files can also be compressed or uncompressed.  Currently only gzip
and bz2 are supported.

Example::

>>> # Create a DataSource, use os.curdir (default) for local storage.
    >>> ds = datasource.DataSource()
    >>>
    >>> # Open a remote file.
    >>> # DataSource downloads the file, stores it locally in:
    >>> #     './www.google.com/index.html'
    >>> # opens the file and returns a file object.
    >>> fp = ds.open('http://www.google.com/index.html')
    >>>
    >>> # Use the file as you normally would
    >>> fp.read()
    >>> fp.close()

"""

__docformat__ = "restructuredtext en"

import os
from shutil import rmtree

# Using a class instead of a module-level dictionary
# to reduce the inital 'import numpy' overhead by
# deferring the import of bz2 and gzip until needed

# TODO: .zip support, .tar support?
class _FileOpeners(object):
    """
    Container for different methods to open (un-)compressed files.

`_FileOpeners` contains a dictionary that holds one method for each
    supported file format. Attribute lookup is implemented in such a way that
    an instance of `_FileOpeners` itself can be indexed with the keys of that
    dictionary. Currently uncompressed files as well as files
    compressed with ``gzip`` or ``bz2`` compression are supported.

Notes
    -----
    `_file_openers`, an instance of `_FileOpeners`, is made available for
    use in the `_datasource` module.

Examples
    --------
    >>> np.lib._datasource._file_openers.keys()
    [None, '.bz2', '.gz']
    >>> np.lib._datasource._file_openers['.gz'] is gzip.open
    True

"""
    def __init__(self):
        self._loaded = False
        self._file_openers = {None: open}
    def _load(self):
        if self._loaded:
            return
        try:
            import bz2
            self._file_openers[".bz2"] = bz2.BZ2File
        except ImportError:
            pass
        try:
            import gzip
            self._file_openers[".gz"] = gzip.open
        except ImportError:
            pass
        self._loaded = True

def keys(self):
        """
        Return the keys of currently supported file openers.

Parameters
        ----------
        None

Returns
        -------
        keys : list
            The keys are None for uncompressed files and the file extension
            strings (i.e. ``'.gz'``, ``'.bz2'``) for supported compression
            methods.

"""
        self._load()
        return self._file_openers.keys()
    def __getitem__(self, key):
        self._load()
        return self._file_openers[key]

_file_openers = _FileOpeners()

def open(path, mode='r', destpath=os.curdir):
    """
    Open `path` with `mode` and return the file object.

If ``path`` is an URL, it will be downloaded, stored in the `DataSource`
    `destpath` directory and opened from there.

Parameters
    ----------
    path : str
        Local file path or URL to open.
    mode : str, optional
        Mode to open `path`. Mode 'r' for reading, 'w' for writing, 'a' to
        append. Available modes depend on the type of object specified by path.
        Default is 'r'.
    destpath : str, optional
        Path to the directory where the source file gets downloaded to for use.
        If `destpath` is None, a temporary directory will be created. The
        default path is the current directory.

Returns
    -------
    out : file object
        The opened file.

Notes
    -----
    This is a convenience function that instantiates a `DataSource` and
    returns the file object from ``DataSource.open(path)``.

"""

ds = DataSource(destpath)
    return ds.open(path, mode)

class DataSource (object):
    """
    DataSource(destpath='.')

A generic data source file (file, http, ftp, ...).

DataSources can be local files or remote files/URLs.  The files may
    also be compressed or uncompressed. DataSource hides some of the low-level
    details of downloading the file, allowing you to simply pass in a valid
    file path (or URL) and obtain a file object.

Parameters
    ----------
    destpath : str or None, optional
        Path to the directory where the source file gets downloaded to for use.
        If `destpath` is None, a temporary directory will be created.
        The default path is the current directory.

Notes
    -----
    URLs require a scheme string (``http://``) to be used, without it they
    will fail::

>>> repos = DataSource()
        >>> repos.exists('www.google.com/index.html')
        False
        >>> repos.exists('http://www.google.com/index.html')
        True

Temporary directories are deleted when the DataSource is deleted.

Examples
    --------
    ::

>>> ds = DataSource('/home/guido')
        >>> urlname = 'http://www.google.com/index.html'
        >>> gfile = ds.open('http://www.google.com/index.html')  # remote file
        >>> ds.abspath(urlname)
        '/home/guido/www.google.com/site/index.html'

>>> ds = DataSource(None)  # use with temporary file
        >>> ds.open('/home/guido/foobar.txt')
        <open file '/home/guido.foobar.txt', mode 'r' at 0x91d4430>
        >>> ds.abspath('/home/guido/foobar.txt')
        '/tmp/tmpy4pgsP/home/guido/foobar.txt'

"""

def __init__(self, destpath=os.curdir):
        """Create a DataSource with a local path at destpath."""
        if destpath:
            self._destpath = os.path.abspath(destpath)
            self._istmpdest = False
        else:
            import tempfile # deferring import to improve startup time
            self._destpath = tempfile.mkdtemp()
            self._istmpdest = True

def __del__(self):
        # Remove temp directories
        if self._istmpdest:
            rmtree(self._destpath)

def _iszip(self, filename):
        """Test if the filename is a zip file by looking at the file extension.
        """
        fname, ext = os.path.splitext(filename)
        return ext in _file_openers.keys()

def _iswritemode(self, mode):
        """Test if the given mode will open a file for writing."""

# Currently only used to test the bz2 files.
        _writemodes = ("w", "+")
        for c in mode:
            if c in _writemodes:
                return True
        return False

def _splitzipext(self, filename):
        """Split zip extension from filename and return filename.

*Returns*:
            base, zip_ext : {tuple}

"""

if self._iszip(filename):
            return os.path.splitext(filename)
        else:
            return filename, None

def _possible_names(self, filename):
        """Return a tuple containing compressed filename variations."""
        names = [filename]
        if not self._iszip(filename):
            for zipext in _file_openers.keys():
                if zipext:
                    names.append(filename+zipext)
        return names

def _isurl(self, path):
        """Test if path is a net location.  Tests the scheme and netloc."""

# We do this here to reduce the 'import numpy' initial import time.
        from urlparse import urlparse

# BUG : URLs require a scheme string ('http://') to be used.
        #       www.google.com will fail.
        #       Should we prepend the scheme for those that don't have it and
        #       test that also?  Similar to the way we append .gz and test for
        #       for compressed versions of files.

scheme, netloc, upath, uparams, uquery, ufrag = urlparse(path)
        return bool(scheme and netloc)

def _cache(self, path):
        """Cache the file specified by path.

Creates a copy of the file in the datasource cache.

"""
        # We import these here because importing urllib2 is slow and
        # a significant fraction of numpy's total import time.
        from urllib2 import urlopen, URLError

upath = self.abspath(path)

# ensure directory exists
        if not os.path.exists(os.path.dirname(upath)):
            os.makedirs(os.path.dirname(upath))

# TODO: Doesn't handle compressed files!
        if self._isurl(path):
            try:
                openedurl = urlopen(path)
                file(upath, 'w').write(openedurl.read())
            except URLError:
                raise URLError("URL not found: %s" % path)
        else:
            try:
                # TODO: Why not just copy the file with shutils.copyfile?
                fp = file(path, 'r')
                file(upath, 'w').write(fp.read())
            except IOError:
                raise IOError("File not found: %s" % path)
        return upath

def _findfile(self, path):
        """Searches for ``path`` and returns full path if found.

If path is an URL, _findfile will cache a local copy and return
        the path to the cached file.
        If path is a local file, _findfile will return a path to that local
        file.

The search will include possible compressed versions of the file and
        return the first occurence found.

"""

# Build list of possible local file paths
        if not self._isurl(path):
            # Valid local paths
            filelist = self._possible_names(path)
            # Paths in self._destpath
            filelist += self._possible_names(self.abspath(path))
        else:
            # Cached URLs in self._destpath
            filelist = self._possible_names(self.abspath(path))
            # Remote URLs
            filelist = filelist + self._possible_names(path)

for name in filelist:
            if self.exists(name):
                if self._isurl(name):
                    name = self._cache(name)
                return name
        return None

def abspath(self, path):
        """
        Return absolute path of file in the DataSource directory.

If `path` is an URL, then `abspath` will return either the location
        the file exists locally or the location it would exist when opened
        using the `open` method.

Parameters
        ----------
        path : str
            Can be a local file or a remote URL.

Returns
        -------
        out : str
            Complete path, including the `DataSource` destination directory.

Notes
        -----
        The functionality is based on `os.path.abspath`.

"""
        # We do this here to reduce the 'import numpy' initial import time.
        from urlparse import urlparse

# TODO:  This should be more robust.  Handles case where path includes
        #        the destpath, but not other sub-paths. Failing case:
        #        path = /home/guido/datafile.txt
        #        destpath = /home/alex/
        #        upath = self.abspath(path)
        #        upath == '/home/alex/home/guido/datafile.txt'

# handle case where path includes self._destpath
        splitpath = path.split(self._destpath, 2)
        if len(splitpath) > 1:
            path = splitpath[1]
        scheme, netloc, upath, uparams, uquery, ufrag = urlparse(path)
        netloc = self._sanitize_relative_path(netloc)
        upath = self._sanitize_relative_path(upath)
        return os.path.join(self._destpath, netloc, upath)

def _sanitize_relative_path(self, path):
        """Return a sanitised relative path for which
        os.path.abspath(os.path.join(base, path)).startswith(base)
        """
        last = None
        path = os.path.normpath(path)
        while path != last:
            last = path
            # Note: os.path.join treats '/' as os.sep on Windows
            path = path.lstrip(os.sep).lstrip('/')
            path = path.lstrip(os.pardir).lstrip('..')
            drive, path = os.path.splitdrive(path) # for Windows
        return path

def exists(self, path):
        """
        Test if path exists.

Test if `path` exists as (and in this order):

- a local file.
        - a remote URL that has been downloaded and stored locally in the
          `DataSource` directory.
        - a remote URL that has not been downloaded, but is valid and accessible.

Parameters
        ----------
        path : str
            Can be a local file or a remote URL.

Returns
        -------
        out : bool
            True if `path` exists.

Notes
        -----
        When `path` is an URL, `exists` will return True if it's either stored
        locally in the `DataSource` directory, or is a valid remote URL.
        `DataSource` does not discriminate between the two, the file is accessible
        if it exists in either location.

"""
        # We import this here because importing urllib2 is slow and
        # a significant fraction of numpy's total import time.
        from urllib2 import urlopen, URLError

# Test local path
        if os.path.exists(path):
            return True

# Test cached url
        upath = self.abspath(path)
        if os.path.exists(upath):
            return True

# Test remote url
        if self._isurl(path):
            try:
                netfile = urlopen(path)
                del(netfile)
                return True
            except URLError:
                return False
        return False

def open(self, path, mode='r'):
        """
        Open and return file-like object.

If `path` is an URL, it will be downloaded, stored in the `DataSource`
        directory and opened from there.

Parameters
        ----------
        path : str
            Local file path or URL to open.
        mode : {'r', 'w', 'a'}, optional
            Mode to open `path`.  Mode 'r' for reading, 'w' for writing, 'a' to
            append. Available modes depend on the type of object specified by
            `path`. Default is 'r'.

Returns
        -------
        out : file object
            File object.

"""

# TODO: There is no support for opening a file for writing which
        #       doesn't exist yet (creating a file).  Should there be?

# TODO: Add a ``subdir`` parameter for specifying the subdirectory
        #       used to store URLs in self._destpath.

if self._isurl(path) and self._iswritemode(mode):
            raise ValueError("URLs are not writeable")

# NOTE: _findfile will fail on a new file opened for writing.
        found = self._findfile(path)
        if found:
            _fname, ext = self._splitzipext(found)
            if ext == 'bz2':
                mode.replace("+", "")
            return _file_openers[ext](found, mode=mode)
        else:
            raise IOError("%s not found." % path)

class Repository (DataSource):
    """
    Repository(baseurl, destpath='.')

A data repository where multiple DataSource's share a base URL/directory.

`Repository` extends `DataSource` by prepending a base URL (or directory)
    to all the files it handles. Use `Repository` when you will be working
    with multiple files from one base URL.  Initialize `Repository` with the
    base URL, then refer to each file by its filename only.

Parameters
    ----------
    baseurl : str
        Path to the local directory or remote location that contains the
        data files.
    destpath : str or None, optional
        Path to the directory where the source file gets downloaded to for use.
        If `destpath` is None, a temporary directory will be created.
        The default path is the current directory.

Examples
    --------
    To analyze all files in the repository, do something like this
    (note: this is not self-contained code)::

>>> repos = np.lib._datasource.Repository('/home/user/data/dir/')
        >>> for filename in filelist:
        ...     fp = repos.open(filename)
        ...     fp.analyze()
        ...     fp.close()

Similarly you could use a URL for a repository::

>>> repos = np.lib._datasource.Repository('http://www.xyz.edu/data')

"""

def __init__(self, baseurl, destpath=os.curdir):
        """Create a Repository with a shared url or directory of baseurl."""
        DataSource.__init__(self, destpath=destpath)
        self._baseurl = baseurl

def __del__(self):
        DataSource.__del__(self)

def _fullpath(self, path):
        """Return complete path for path.  Prepends baseurl if necessary."""
        splitpath = path.split(self._baseurl, 2)
        if len(splitpath) == 1:
            result = os.path.join(self._baseurl, path)
        else:
            result = path    # path contains baseurl already
        return result

def _findfile(self, path):
        """Extend DataSource method to prepend baseurl to ``path``."""
        return DataSource._findfile(self, self._fullpath(path))

def abspath(self, path):
        """
        Return absolute path of file in the Repository directory.

If `path` is an URL, then `abspath` will return either the location
        the file exists locally or the location it would exist when opened
        using the `open` method.

Parameters
        ----------
        path : str
            Can be a local file or a remote URL. This may, but does not have
            to, include the `baseurl` with which the `Repository` was initialized.

Returns
        -------
        out : str
            Complete path, including the `DataSource` destination directory.

"""
        return DataSource.abspath(self, self._fullpath(path))

def exists(self, path):
        """
        Test if path exists prepending Repository base URL to path.

Test if `path` exists as (and in this order):

Returns
        -------
        out : bool
            True if `path` exists.

"""
        return DataSource.exists(self, self._fullpath(path))

def open(self, path, mode='r'):
        """
        Open and return file-like object prepending Repository base URL.

If `path` is an URL, it will be downloaded, stored in the DataSource
        directory and opened from there.

Parameters
        ----------
        path : str
            Local file path or URL to open. This may, but does not have to,
            include the `baseurl` with which the `Repository` was initialized.
        mode : {'r', 'w', 'a'}, optional
            Mode to open `path`.  Mode 'r' for reading, 'w' for writing, 'a' to
            append. Available modes depend on the type of object specified by
            `path`. Default is 'r'.

Returns
        -------
        out : file object
            File object.

"""
        return DataSource.open(self, self._fullpath(path), mode)

def listdir(self):
        """
        List files in the source Repository.

Returns
        -------
        files : list of str
            List of file names (not containing a directory part).

Notes
        -----
        Does not currently work for remote repositories.

"""
        if self._isurl(self._baseurl):
            raise NotImplementedError, \
                  "Directory listing of URLs, not supported yet."
        else:
            return os.listdir(self._baseurl)

cmd: